Problems with bootstrapping 4.0.1

[Kevin McBride]

I have been having comparison errors while building a native 4.0.1
compiler for my Fedora Core 4 system.  I checked the flags for a file I
randomly chose, c-pragma.c, and the flags don't differ from initial
build of xgcc to stage2.  I have included a tarball of the object files
for c-pragma.c and a c-pragma-make.err file containing the make outputs
when c-pragma.c was compiled.  Has any one else experienced this problem
on Fedora Core 3 and/or have a solution to the problem?

Surprisingly, I have been able to bootstrap the latest gcc on the cvs
without any comparison problems, though (since 4.0.2 is prerelease) make
check reported a whole bunch of problems.  I had to rebuild my system
due to an "init" malfunction, so I will have to look on my backups to
see if I can find the testcases for submission.
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WITHOUT OPTIMIZATION
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pre-stage build:
gcc -c   -g   -DIN_GCC   -W -Wall -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes -pedantic -Wno-long-long -Wno-variadic-macros -Wold-style-definition    -DHAVE_CONFIG_H    -I. -I. -I../../gcc -I../../gcc/. -I../../gcc/../include -I../../gcc/../libcpp/include  ../../gcc/c-pragma.c -o c-pragma.o

stage1/xgcc -Bstage1/ -B/usr/i686-pc-linux-gnu/bin/ -c   -g  -DIN_GCC   -W -Wall -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes -pedantic -Wno-long-long -Wno-variadic-macros -Wold-style-definition   -Wno-error  -DHAVE_CONFIG_H -I. -I. -I../../gcc -I../../gcc/. -I../../gcc/../include -I../../gcc/../libcpp/include  ../../gcc/c-parse.c -o c-parse.o

stage2/xgcc -Bstage2/ -B/usr/i686-pc-linux-gnu/bin/ -c   -g  -DIN_GCC   -W -Wall -Wwrite-strings -Wstrict-prototypes -Wmissing-prototypes -pedantic -Wno-long-long -Wno-variadic-macros -Wold-style-definition   -Wno-error  -DHAVE_CONFIG_H -I. -I. -I../../gcc -I../../gcc/. -I../../gcc/../include -I../../gcc/../libcpp/include  ../../gcc/c-parse.c -o c-parse.o