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See the docs for --enable-symvers at http://gcc.gnu.org/onlinedocs/libstdc++/manual/configure.html
If that isn't given explicitly then it will be guessed by configure. The guess will depend on whether the linker supports symvers or not so depends on what linker gcc is configured to use. Also support for --enable-symvers=sun was added in gcc 4.6, so maybe that is being used by your 4.6 build.
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